Notably, Ubigraph for python and prefuse for java.

select (refLocation, macroName)
FROM macrosMD5
GROUP BY refLocation
HAVING( COUNT(refLocation)>1);;

In this case we’re looking for macros with the same refLocation

Actually, SQLite will easily do 50,000 or more INSERT statements per second on an average desktop computer. But it will only do a few dozen transactions per second. Transaction speed is limited by the rotational speed of your disk drive. A transaction normally requires two complete rotations of the disk platter, which on a 7200RPM disk drive limits you to about 60 transactions per second.Transaction speed is limited by disk drive speed because (by default) SQLite actually waits until the data really is safely stored on the disk surface before the transaction is complete. That way, if you suddenly lose power or if your OS crashes, your data is still safe. For details, read about atomic commit in SQLite..

Another solution is to set the synchronous pragma to false

ith synchronous OFF (0), SQLite continues without pausing as soon as it has handed data off to the operating system. If the application running SQLite crashes, the data will be safe, but the database might become corrupted if the operating system crashes or the computer loses power before that data has been written to the disk surface. On the other hand, some operations are as much as 50 or more times faster with synchronous OFF.